- Habronema Diesing 1861
- Hachijopagurus Osawa & Okuno 2003
- Haeckelia Carus 1863
- Haematoloechus Looss 1899
- Haemonchus Cobb 1898
- Halecium Oken 1815
- Halicephalobus Timm 1956
- Halichoeres Rüppell 1835
- Halichondria Fleming 1828
- Haliclona Grant 1836
- Halicyclops Norman 1903
- Halieutaea Valenciennes 1837
- Halimeda J.V.F. Lamouroux 1812
- Haliotis Linnaeus 1758
- Halipegus Looss 1899
- Haliplanella Hand 1956
- Haliporoides Stebbing 1914
- Halityle Fisher 1913
- Halocercus Baylis & Daubney 1925
- Halocynthia Verrill 1879
- Halophila Du Petit-Thouars 1806
- Halosydna Kinberg 1855
- Haloxylon Bunge ex E.Fenzl
- Haltichella Spinola 1811
- Hamatospiculum Skrjabin 1916
- Haminoea Turton & Kingston in Carrington 1830
- Hapalogenys Richardson 1844
- Haplochis Looss 1899
- Haplochlaenius Lutshnik 1933
- Haplochromis Hilgendorf 1888
- Haploniscus Richardson 1908
- Haplophragmoides Cushman 1910
- Haplosyllis Langerhans 1879
- Harmothoe Kinberg 1855
- Harpacticella Sars 1908
- Harpalus Latreille 1802
- H. (Loboharpalus)
- H. (Pseudoophonus)
- H. (Zangoharpalus)
- Hartigia Schiødte 1838
- Hawaiarca Dall, Bartsch & Rehder 1938
- Haworthia Duval
- Hazeus Jordan & Snyder 1901
- Hebella Allman 1888
- Heimyscus
- Helice De Haan 1833
- Helicolenus Goode & Bean 1896
- Heligmonella Mönnig 1927
- Heligmonina Baylis 1928
- Heligmonoides Baylis 1928
- Heligmosomoides Hall 1916
- Heligmosomum Railliet & Henry 1909
- Heliocidaris L. Agassiz & Desor 1846
- Heliocopris Hope 1837
- Helochares Mulsant 1844
- Hemiaegina Mayer 1890
- Hemibarbus Bleeker 1860
- Hemicarabus Gehin 1885
- Hemicentrotus Mortensen 1942
- Hemicyclops Böck 1872
- Hemiechinus Fitzinger 1866
- Hemigrammocypris Fowler 1910
- Hemigrapsus Dana 1851
- Hemilamprops G.O. Sars 1883
- Hemipagurus Smith 1881
- Hemipenaeus Bate 1881
- Hemisiriella Hansen 1910
- Hemithiris d'Orbigny 1847
- Hemizaptyx Pilsbry 1905
- Henicorhynchus H.M. Smith 1945
- Heniochus G. Cuvier 1816
- Henricia Gray 1840
- Heptacyclus Vasiliev 1939
- Heptamelus Haliday 1855
- Herklotichthyes Whitley 1951
- Hermenia Grube 1856
- Herpestes Illiger 1811
- Herpotanais Wolff 1956
- Hesperibalanus Pilsbry 1916
- Heterakis Schrank 1790
- Heteralepas Pilsbry 1907
- Hetereleotris Bleeker 1874
- Heterocarpus A.Milne-Edwards 1881
- Heterocyathus Milne Edwards & Haime 1848
- Heterodontus Blainville 1816
- Heteromycteris Kaup 1858
- Heteronema Dujardin 1841
- Heteronucia Alcock 1896
- Heteropelma Wesmael 1849
- Heterophyes Cobbold 1866
- Heteroplopomus Tomiyama 1936
- Heteropriapulus Kritsky 2007
- Heteropsammia Milne-Edwards & Haime 1848
- Heterozaptyx Pilsbry 1906
- Heterozonias Fisher 1910
- Hexacentrus Serville 1831
- Hexagenia Walsh 1863
- Hexagrammos Tilesius 1810
- Hexametra Travassos 1919
- Hexamita Dujardin 1838
- Hexechamaesipho Poltarukha 1996
- Hiatella Bosc 1801
- Hibiscus Linné
- Hildenbrandia Nardo 1834
- Hime Starks 1924
- Hinomoto Hoshina 2002
- Hippichthys Bleeker 1849
- Hippocampus Rafinesque 1810
- Hippoglossoides Gottsche 1835
- Hiroa Ross & Newman 1973
- Hirtodrosophila Duda 1923
- Hispanirhynchia Thomson 1927
- Histiopterus Temminck & Schlegel 1844
- Histrio Fischer 1813
- Hokkaidocephala Tenora, Gulyaev & Kamiya 1999
- Hololepidella Willey 1905
- Homo Linnaeus 1758
- Homotechnes Candèze 1882
- Hoplichthys G. Cuvier 1829
- Hoplobrotula Gill 1863
- Hormiphora L. Agassiz 1860
- Hormomya Mörch 1853
- Horornis Hodgson 1845
- Hucho Günther 1866
- Huso J.F. Brandt & Ratzeburg 1833
- Hyale Rathke 1837
- Hyalella S.I. Smith 1874
- Hybomys Thomas 1910
- Hydaticus Leach 1817
- Hydatophylax Wallengren 1891
- Hydnobius Schmidt 1841
- Hydnophora Fischer von Waldheim 1807
- Hydrangea Linné
- Hydrilla L.C. Richard
- Hydrodictyon Roth 1797
- Hydroglyphus Motschulsky 1853
- Hydroides Gunnerus 1768
- Hydrometra Latreille 1796
- Hydrophilus Geoffroy 1762
- Hygrosoma Mortensen 1903
- Hyla Laurenti 1768
- Hylomyscus Thomas 1926
- Hymeniacidon Bowerbank 1858
- Hymenolepis Weinland 1858
- Hymenopenaeus Smith 1882
- Hynobius Tschudi 1838
- Hyostrongylus Hall 1921
- Hyotissa Stenzel 1971
- Hypodytes Gistel 1848
- Hyperoglyphe Günther 1859
- Hypherpes Chaudoir 1838
- Hyphydrus Illiger 1802
- Hypnum Hedwig 1801
- Hypoatherina Schultz 1948
- Hypodytes Gistel 1848
- Hypomesus T.N. Gill 1862
- Hypophthalmichthys Bleeker 1860
- Hypoponera Santschi 1938
- Hyporhamphus Gill 1860
- Hyporthodus Gill 1861
- Hypothalassia Gistel 1848
- Hypsicomus Grube 1870
- Hypsipetes Vigors 1831